Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----------------
-
Solanum tuberosum
-------
Solanum lycopersicum
-------
-
Arabidopsis lyrata subsp. lyrata
------------------------
--------
----
Arabidopsis thaliana
-------------
-
Brassica rapa subsp. pekinensis
-------------
Brassica oleracea var. oleracea
-------------
-
Glycine max
-------
----
----
Medicago truncatula
-------
--------
Prunus persica
------------------
Populus trichocarpa
-------------------
Vitis vinifera
-------------------
Theobroma cacao
-------
-
Sorghum bicolor
-------------------------------
----
Zea mays
--------------
Setaria italica
----
-------
-
Oryza sativa Indica Group
-------------
----
Oryza nivara
-------------
----
-
Oryza sativa Japonica Group
-------------------
Oryza rufipogon
--------------------
-
Oryza barthii
----------
----
----
Oryza glaberrima
-------------------------------
Oryza meridionalis
----------------
----------------
Oryza longistaminata
----------------
-------------------
Oryza glumipatula
----------------
-----------------------
Oryza punctata
----
---------------------------------------
Oryza brachyantha
----------------------------------------------
Leersia perrieri
----------
----------
-
Aegilops tauschii
-------------
-------
Triticum aestivum (component D)
----------------
-
-
Triticum aestivum (component A)
----------------------
Triticum urartu
----
-------------
--------
Triticum aestivum
----------------------------
-----------
Triticum aestivum (component B)
---------------------------
Hordeum vulgare subsp. vulgare
----
-------------------------
Brachypodium distachyon
----------------------------------------------------
Musa acuminata subsp. malaccensis
----
------------------------------------------------------
Amborella trichopoda
-------------------------------------------------------------
Selaginella moellendorffii
----
-----------------------------------------------------------
Physcomitrella patens
--------------------------------------------------------------
-
Ostreococcus lucimarinus CCE9901
----------
Chlamydomonas reinhardtii
-
----------------------------------------------------------------
Cyanidioschyzon merolae strain 10D
-------
-
Caenorhabditis elegans
-------
----
Drosophila melanogaster
--------------------------------------------------------
----
-
Homo sapiens
-------
Ciona savignyi
------------
Saccharomyces cerevisiae S288c